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pipelinecl.py  (BioNano Genomics)

 
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    BioNano Genomics pipelinecl.py
    Pipelinecl.Py, supplied by BioNano Genomics, used in various techniques. Bioz Stars score: 90/100, based on 1 PubMed citations. ZERO BIAS - scores, article reviews, protocol conditions and more
    https://www.bioz.com/product/pipelinecl%2Epy/pipelinecl+py/pm39773996-58-21-27
    Average 90 stars, based on 1 article reviews
    pipelinecl.py - by Bioz Stars, 2026-09
    90/100 stars

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    Article Title: W chromosome sequences of two bombycid moths provide an insight into the origin of Fem.
    Article Snippet: In the single enzyme pipeline, to create a .cmap file (describing the labelled genomic regions from the obtained data), we used pipelineCL.py bundled with the Bionano Solve with default settings to create the map data.

    Article Title: A chromosome-level genome assembly of wild silkmoth, Bombyx mandarina.
    Article Snippet: In the single enzyme pipeline, to create a.cmap file (describing the labeled genomic regions from the obtained data), we used a wrapper script “pipelineCL.py” bundled with the Bionano Solve with default settings.

    Article Title: Reference genomes for BALB/c Nude and NOD/SCID mouse models
    Article Snippet: These molecules were then assembled using Bionano’s tool “pipelineCL.py” (Solve3.6.1_11162020) and used to scaffold the matching, cleaned genome assembly.

    Article Title: Recurrent inversion polymorphisms in humans associate with genetic instability and genomic disorders.
    Article Snippet: Starting from the annotation of copy number polymorphic segments (n = 432) for 11 samples created on the basis of Bionano optical maps, we computed a concordance estimate between this annotation and the corresponding set of phased assemblies in a similar way as described previously (Ebert et al., 2021).



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